Variant report

Variant	rs58485629
Chromosome Location	chr11:59440586-59440587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11229984	1.00[AMR][1000 genomes]
rs11230060	1.00[AMR][1000 genomes]
rs12272496	1.00[AMR][1000 genomes]
rs12275935	1.00[AMR][1000 genomes]
rs12276470	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283319	1.00[AMR][1000 genomes]
rs12288523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293459	1.00[AMR][1000 genomes]
rs12295294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28571182	1.00[AMR][1000 genomes]
rs28573682	1.00[AMR][1000 genomes]
rs57137541	1.00[AMR][1000 genomes]
rs60434270	1.00[AMR][1000 genomes]
rs7129130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484858	1.00[AMR][1000 genomes]
rs73486922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59438600-59441600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:59440000-59442000	Enhancers	Liver	Liver
3	chr11:59440400-59440600	Enhancers	GM12878-XiMat	blood
4	chr11:59440400-59440800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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