Variant report

Variant	rs12291351
Chromosome Location	chr11:59328331-59328332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59326882..59329448-chr11:59381512..59384615,3	MCF-7	breast:
2	chr11:46867144..46867645-chr11:59328051..59328828,2	HCT-116	colon:
3	chr11:59327473..59329060-chr11:59341857..59344264,2	K562	blood:
4	chr11:59326302..59328459-chr11:59344498..59347329,2	K562	blood:
5	chr11:59327282..59329404-chr11:59605781..59608762,2	K562	blood:
6	chr11:59327897..59328402-chr22:18121382..18122026,2	Hela-S3	cervix:
7	chr11:59327559..59329707-chr11:59434629..59437486,4	K562	blood:
8	chr1:117112976..117113503-chr11:59327920..59328900,2	Hela-S3	cervix:
9	chr11:59327816..59329707-chr11:59434629..59437740,3	K562	blood:
10	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:
11	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255355	Chromatin interaction
ENSG00000099968	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255139	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11229984	1.00[AMR][1000 genomes]
rs11230060	1.00[AMR][1000 genomes]
rs12272496	1.00[AMR][1000 genomes]
rs12275935	1.00[AMR][1000 genomes]
rs12276470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283319	1.00[AMR][1000 genomes]
rs12288523	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293459	1.00[AMR][1000 genomes]
rs12295294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28571182	1.00[AMR][1000 genomes]
rs28573682	1.00[AMR][1000 genomes]
rs57137541	1.00[AMR][1000 genomes]
rs58485629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60434270	1.00[AMR][1000 genomes]
rs7129130	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484858	1.00[AMR][1000 genomes]
rs73486922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488876	1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
3	chr11:59326800-59328600	Active TSS	Brain Cingulate Gyrus	brain
4	chr11:59327200-59328600	Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr11:59327200-59328600	Active TSS	Fetal Heart	heart
6	chr11:59327200-59329000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr11:59327200-59329000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr11:59327200-59329000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:59327200-59329000	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr11:59327400-59328600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:59327400-59328600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:59327400-59328600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:59327400-59328600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:59327400-59328600	Active TSS	Hela-S3	cervix
15	chr11:59327400-59328600	Active TSS	Osteobl	bone
16	chr11:59327400-59328800	Active TSS	Right Atrium	heart
17	chr11:59327400-59328800	Active TSS	Right Ventricle	heart
18	chr11:59327400-59329000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr11:59327400-59329000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:59327400-59329000	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr11:59327400-59329000	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr11:59327400-59329000	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr11:59327400-59329000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:59327400-59329000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:59327400-59329000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:59327400-59329000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:59327400-59329000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr11:59327400-59329000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr11:59327600-59328600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:59327600-59328600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:59327600-59328600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:59327600-59328600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:59327600-59328600	Active TSS	Muscle Satellite Cultured Cells	--
38	chr11:59327600-59328600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:59327600-59328600	Active TSS	Brain Hippocampus Middle	brain
40	chr11:59327600-59328600	Active TSS	Colon Smooth Muscle	Colon
41	chr11:59327600-59328600	Active TSS	Fetal Brain Male	brain
42	chr11:59327600-59328600	Active TSS	Placenta	Placenta
43	chr11:59327600-59328600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr11:59327600-59328600	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:59327600-59328600	Active TSS	HMEC	breast
46	chr11:59327600-59328600	Active TSS	HUVEC	blood vessel
47	chr11:59327600-59328800	Active TSS	Fetal Muscle Trunk	muscle
48	chr11:59327600-59329000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:59327600-59329000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:59327600-59329000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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