Variant report

Variant	rs73484858
Chromosome Location	chr11:59326038-59326039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:59324693-59326082	H1-hESC	embryonic stem cell:	n/a	n/a
2	BCL3	chr11:59325910-59326322	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59324538..59326283-chr11:59383295..59385264,2	K562	blood:

Variant related genes	Relation type
RNU7-58P	TF binding region
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction

rs_ID	r²[population]
rs11229984	1.00[AMR][1000 genomes]
rs11230008	1.00[AFR][1000 genomes]
rs11230060	1.00[AMR][1000 genomes]
rs12272496	1.00[AMR][1000 genomes]
rs12275935	1.00[AMR][1000 genomes]
rs12276416	0.83[AFR][1000 genomes]
rs12276470	1.00[AMR][1000 genomes]
rs12280000	0.92[AFR][1000 genomes]
rs12283319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288523	1.00[AMR][1000 genomes]
rs12291351	1.00[AMR][1000 genomes]
rs12292617	1.00[AMR][1000 genomes]
rs12293459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295294	1.00[AMR][1000 genomes]
rs28571182	1.00[AMR][1000 genomes]
rs28573682	1.00[AMR][1000 genomes]
rs57137541	1.00[AMR][1000 genomes]
rs58485629	1.00[AMR][1000 genomes]
rs60434270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129130	1.00[AMR][1000 genomes]
rs73486922	1.00[AMR][1000 genomes]
rs73488876	1.00[AMR][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
2	chr11:59322800-59326200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:59323000-59326200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr11:59323000-59326200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:59323200-59326200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr11:59323400-59326200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:59323400-59326400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:59323600-59327800	Weak transcription	Lung	lung
10	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
11	chr11:59323800-59326200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr11:59323800-59327600	Weak transcription	Aorta	Aorta
13	chr11:59323800-59327600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:59323800-59327800	Weak transcription	Colonic Mucosa	Colon
15	chr11:59324000-59327200	Weak transcription	Dnd41	blood
16	chr11:59324000-59327400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:59324000-59327800	Weak transcription	Psoas Muscle	Psoas
18	chr11:59324200-59327800	Weak transcription	Ovary	ovary
19	chr11:59324600-59327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:59324600-59327800	Weak transcription	Pancreas	Pancrea
21	chr11:59324600-59328000	Weak transcription	Small Intestine	intestine
22	chr11:59325000-59326600	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:59325000-59326600	Weak transcription	Brain Substantia Nigra	brain
24	chr11:59325000-59327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:59325000-59327400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:59325000-59327400	Weak transcription	Right Atrium	heart
27	chr11:59325000-59327400	Weak transcription	Spleen	Spleen
28	chr11:59325000-59327600	Enhancers	Primary B cells from peripheral blood	blood
29	chr11:59325000-59327600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:59325000-59327600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:59325000-59327600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:59325000-59327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:59325000-59327600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:59325000-59327800	Weak transcription	HSMM	muscle
35	chr11:59325000-59327800	Weak transcription	HSMMtube	muscle
36	chr11:59325000-59327800	Weak transcription	NHEK	skin
37	chr11:59325200-59327400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:59325400-59326200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:59325400-59326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:59325400-59326600	Bivalent Enhancer	Fetal Lung	lung
41	chr11:59325400-59327400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:59325400-59327400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:59325400-59327400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:59325400-59327400	Bivalent Enhancer	Fetal Thymus	thymus
45	chr11:59325400-59327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:59325400-59327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:59325600-59326200	Bivalent Enhancer	Brain Germinal Matrix	brain
48	chr11:59325600-59326200	Bivalent Enhancer	Fetal Kidney	kidney
49	chr11:59325600-59326200	Flanking Active TSS	GM12878-XiMat	blood
50	chr11:59325600-59326200	Flanking Active TSS	K562	blood

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