Variant report

Variant	rs1229051
Chromosome Location	chr7:38982027-38982028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1229009	1.00[ASN][1000 genomes]
rs1229026	1.00[ASN][1000 genomes]
rs1229029	1.00[ASN][1000 genomes]
rs59190975	1.00[ASN][1000 genomes]
rs859515	1.00[ASN][1000 genomes]
rs859516	1.00[ASN][1000 genomes]
rs859518	1.00[ASN][1000 genomes]
rs859531	1.00[ASN][1000 genomes]
rs859536	1.00[ASN][1000 genomes]
rs859539	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs859540	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38972600-38987200	Weak transcription	Aorta	Aorta
2	chr7:38981400-38983400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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