Variant report

Variant	rs12293059
Chromosome Location	chr11:23722836-23722837
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11027434	0.86[EUR][1000 genomes]
rs11027435	0.86[EUR][1000 genomes]
rs11027436	0.86[EUR][1000 genomes]
rs11027437	0.86[EUR][1000 genomes]
rs11027438	0.86[EUR][1000 genomes]
rs11027440	0.86[EUR][1000 genomes]
rs11027446	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11821362	0.81[AMR][1000 genomes]
rs12269913	0.86[EUR][1000 genomes]
rs12274900	0.86[EUR][1000 genomes]
rs12277987	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280993	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12282955	0.86[EUR][1000 genomes]
rs12283754	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12288125	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12289552	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7108807	1.00[EUR][1000 genomes]
rs7126806	1.00[EUR][1000 genomes]
rs73435840	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv469942	chr11:23677246-23723766	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23714400-23723600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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