Variant report

Variant	rs12293328
Chromosome Location	chr11:70917708-70917709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70873742..70875932-chr11:70916305..70918922,2	MCF-7	breast:
2	chr11:70915267..70916820-chr11:70917171..70919345,2	MCF-7	breast:
3	chr11:70908146..70914464-chr11:70915141..70919274,9	MCF-7	breast:
4	chr11:70911157..70912782-chr11:70914523..70918425,4	MCF-7	breast:
5	chr11:70917562..70919674-chr11:70922188..70924299,2	MCF-7	breast:
6	chr11:70915958..70917712-chr11:70995189..70998003,2	MCF-7	breast:
7	chr11:70917604..70920441-chr11:70959224..70961186,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55805348	1.00[AMR][1000 genomes]
rs56044413	1.00[AMR][1000 genomes]
rs58854299	1.00[AMR][1000 genomes]
rs73532375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:70913400-70920600	Enhancers	Liver	Liver
3	chr11:70914200-70919800	Weak transcription	A549	lung
4	chr11:70915400-70917800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:70915400-70918000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:70915400-70919200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:70916200-70924200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:70916600-70918200	Enhancers	Placenta	Placenta
9	chr11:70916600-70919200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:70916800-70917800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:70916800-70917800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:70916800-70918000	Enhancers	Fetal Intestine Large	intestine
13	chr11:70917000-70917800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:70917000-70917800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:70917000-70917800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:70917000-70917800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:70917000-70917800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr11:70917000-70917800	Flanking Active TSS	HSMM	muscle
19	chr11:70917200-70918000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:70917200-70918000	Weak transcription	Lung	lung
21	chr11:70917200-70918000	Enhancers	Stomach Mucosa	stomach
22	chr11:70917200-70918800	Weak transcription	Pancreas	Pancrea
23	chr11:70917200-70932800	Weak transcription	Gastric	stomach
24	chr11:70917400-70917800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:70917400-70917800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:70917400-70918000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:70917400-70918000	Enhancers	NHDF-Ad	bronchial
28	chr11:70917400-70918800	Weak transcription	Fetal Intestine Small	intestine
29	chr11:70917400-70930000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:70917400-70933600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:70917600-70917800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:70917600-70917800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:70917600-70917800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:70917600-70917800	Enhancers	Fetal Lung	lung
35	chr11:70917600-70917800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr11:70917600-70917800	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr11:70917600-70918000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:70917600-70918000	Bivalent Enhancer	Fetal Stomach	stomach
39	chr11:70917600-70918000	Enhancers	HSMMtube	muscle
40	chr11:70917600-70918400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:70917600-70918600	Enhancers	Fetal Muscle Leg	muscle
42	chr11:70917600-70918600	Weak transcription	HepG2	liver
43	chr11:70917600-70918800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr11:70917600-70919400	Weak transcription	Brain Substantia Nigra	brain
45	chr11:70917600-70919400	Weak transcription	Fetal Kidney	kidney
46	chr11:70917600-70919600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:70917600-70925200	Weak transcription	Fetal Brain Male	brain
48	chr11:70917600-70934000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links