Variant report

Variant	rs58854299
Chromosome Location	chr11:70984765-70984766
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12272819	1.00[AMR][1000 genomes]
rs12293328	1.00[AMR][1000 genomes]
rs55743867	0.90[AFR][1000 genomes]
rs55805348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55863521	0.94[AFR][1000 genomes]
rs55929954	0.90[AFR][1000 genomes]
rs56044413	1.00[AMR][1000 genomes]
rs56100131	0.92[AFR][1000 genomes]
rs56705610	0.90[AFR][1000 genomes]
rs56966971	0.94[AFR][1000 genomes]
rs56967953	0.87[AFR][1000 genomes]
rs57009928	0.90[AFR][1000 genomes]
rs57063205	0.90[AFR][1000 genomes]
rs58360857	0.90[AFR][1000 genomes]
rs59055707	0.84[AFR][1000 genomes]
rs59147071	0.94[AFR][1000 genomes]
rs59209313	0.94[AFR][1000 genomes]
rs59439599	0.94[AFR][1000 genomes]
rs59444222	0.87[AFR][1000 genomes]
rs60092825	0.90[AFR][1000 genomes]
rs60462266	0.84[AFR][1000 genomes]
rs60504655	0.94[AFR][1000 genomes]
rs60552266	0.90[AFR][1000 genomes]
rs60599873	0.90[AFR][1000 genomes]
rs73532375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532387	0.94[AFR][1000 genomes]
rs73532391	0.80[AFR][1000 genomes]
rs73532392	0.94[AFR][1000 genomes]
rs73532402	0.94[AFR][1000 genomes]
rs73534114	0.94[AFR][1000 genomes]
rs73534119	0.94[AFR][1000 genomes]
rs73534121	0.94[AFR][1000 genomes]
rs73534124	0.94[AFR][1000 genomes]
rs73534125	0.92[AFR][1000 genomes]
rs73534129	0.94[AFR][1000 genomes]
rs73534130	0.94[AFR][1000 genomes]
rs73534131	0.94[AFR][1000 genomes]
rs73534133	0.94[AFR][1000 genomes]
rs73534144	0.90[AFR][1000 genomes]
rs73534148	0.90[AFR][1000 genomes]
rs73536025	0.90[AFR][1000 genomes]
rs73536027	0.90[AFR][1000 genomes]
rs73536029	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70981200-70991000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:70981400-70985800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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