Variant report

Variant	rs73532387
Chromosome Location	chr11:70997551-70997552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70915958..70917712-chr11:70995189..70998003,2	MCF-7	breast:
2	chr11:70995291..70998088-chr11:71041899..71044106,2	MCF-7	breast:
3	chr11:70995195..70997597-chr11:71010431..71012982,2	MCF-7	breast:
4	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
5	chr11:70959273..70962056-chr11:70997227..71000001,2	MCF-7	breast:
6	chr11:70961612..70967443-chr11:70992106..70998044,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55743867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805348	0.95[AFR][1000 genomes]
rs55863521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55929954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100131	0.98[AFR][1000 genomes]
rs56705610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56966971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56967953	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57009928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57063205	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58360857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854299	0.94[AFR][1000 genomes]
rs59055707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59147071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59439599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59444222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793283	1.00[AMR][1000 genomes]
rs60092825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60462266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60504655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60599873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532375	0.97[AFR][1000 genomes]
rs73532391	0.86[AFR][1000 genomes]
rs73532392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70991800-70998000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:70992000-70999600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:70993000-70997600	Enhancers	NHEK	skin
4	chr11:70993000-70999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:70994000-70997800	Weak transcription	Fetal Lung	lung
6	chr11:70994000-70998000	Weak transcription	Spleen	Spleen
7	chr11:70994600-70998000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:70995200-70998800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:70995600-70998800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:70995800-70997600	Enhancers	HSMM	muscle
11	chr11:70996000-70997600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:70996000-70997800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:70996000-70997800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:70996000-70998600	Enhancers	Pancreas	Pancrea
15	chr11:70996200-70998200	Weak transcription	Stomach Mucosa	stomach
16	chr11:70996400-70997800	Weak transcription	Colonic Mucosa	Colon
17	chr11:70996400-70997800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:70996400-70997800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:70996400-70997800	Weak transcription	Gastric	stomach
20	chr11:70996400-70997800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:70996400-70998000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:70996400-70998600	Enhancers	Esophagus	oesophagus
23	chr11:70996800-70997800	Enhancers	HSMMtube	muscle
24	chr11:70997000-70997600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:70997000-70997600	Enhancers	HMEC	breast
26	chr11:70997000-70998600	Enhancers	Fetal Kidney	kidney
27	chr11:70997000-70999600	Enhancers	NHDF-Ad	bronchial
28	chr11:70997200-70997800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:70997200-70997800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:70997200-70998000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:70997200-70998200	Enhancers	A549	lung
32	chr11:70997200-70998600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr11:70997200-70999200	Enhancers	NHLF	lung
34	chr11:70997400-70997800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:70997400-70998000	Enhancers	NH-A	brain
36	chr11:70997400-70998600	Enhancers	Liver	Liver
37	chr11:70997400-70998600	Enhancers	Lung	lung
38	chr11:70997400-70998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:70997400-70998800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:70997400-70999000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:70997400-70999400	Enhancers	Osteobl	bone
42	chr11:70997400-70999600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:70997400-70999600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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