Variant report

Variant	rs59147071
Chromosome Location	chr11:71005126-71005127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71001309..71004184-chr11:71004568..71006622,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55743867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805348	0.95[AFR][1000 genomes]
rs55863521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55929954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100131	0.98[AFR][1000 genomes]
rs56705610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56966971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56967953	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57009928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57063205	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58360857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854299	0.94[AFR][1000 genomes]
rs59055707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59439599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59444222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793283	1.00[AMR][1000 genomes]
rs60092825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60462266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60504655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60599873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532375	0.97[AFR][1000 genomes]
rs73532387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532391	0.86[AFR][1000 genomes]
rs73532392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998400-71009200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
4	chr11:70998800-71009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:71002000-71009200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:71004400-71006600	Enhancers	Placenta	Placenta
7	chr11:71005000-71005200	Enhancers	Esophagus	oesophagus
8	chr11:71005000-71005600	Bivalent Enhancer	HepG2	liver
9	chr11:71005000-71009200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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