Variant report

Variant	rs73536027
Chromosome Location	chr11:71008441-71008442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
2	chr11:70993749..70996516-chr11:71005355..71010355,6	MCF-7	breast:
3	chr11:70961841..70965105-chr11:71007270..71010142,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55743867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805348	0.92[AFR][1000 genomes]
rs55863521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55929954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100131	0.95[AFR][1000 genomes]
rs56705610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56966971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56967953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57009928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57063205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58360857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854299	0.90[AFR][1000 genomes]
rs59055707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59147071	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59439599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59444222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793283	1.00[AMR][1000 genomes]
rs60092825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60462266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60504655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60599873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532375	0.94[AFR][1000 genomes]
rs73532387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532391	0.83[AFR][1000 genomes]
rs73532392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534131	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998400-71009200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
4	chr11:70998800-71009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:71002000-71009200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:71005000-71009200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:71006600-71009000	Weak transcription	Placenta	Placenta
8	chr11:71007200-71009200	Weak transcription	Esophagus	oesophagus
9	chr11:71007400-71009200	Weak transcription	HSMM	muscle
10	chr11:71007400-71014200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:71008400-71010200	Enhancers	Osteobl	bone
12	chr11:71008400-71012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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