The 2.0 version of rSNPBase

Variant report

Variant rs12293953
Chromosome Location chr11:45249760-45249761
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45205800-45251800 Weak transcription Primary T helper cells PMA-I stimulated --
2 chr11:45206600-45251600 Weak transcription HepG2 liver
3 chr11:45210200-45251600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr11:45232400-45250400 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr11:45232600-45255200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr11:45235600-45251800 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr11:45235600-45255000 Strong transcription Fetal Stomach stomach
8 chr11:45237200-45252400 Weak transcription Psoas Muscle Psoas
9 chr11:45239400-45257200 Weak transcription Right Atrium heart
10 chr11:45239800-45265400 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr11:45240400-45251600 Strong transcription Fetal Adrenal Gland Adrenal Gland
12 chr11:45240400-45252000 Strong transcription Fetal Muscle Leg muscle
13 chr11:45240800-45250600 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr11:45240800-45250800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr11:45240800-45251400 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr11:45241000-45249800 Strong transcription Ovary ovary
17 chr11:45241000-45251000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr11:45241000-45252400 Strong transcription Fetal Muscle Trunk muscle
19 chr11:45241200-45250800 Strong transcription Stomach Smooth Muscle stomach
20 chr11:45241400-45250600 Strong transcription Duodenum Smooth Muscle Duodenum
21 chr11:45241800-45251200 Strong transcription Fetal Lung lung
22 chr11:45242200-45249800 Strong transcription Fetal Brain Female brain
23 chr11:45242400-45249800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr11:45245000-45249800 Strong transcription Brain Hippocampus Middle brain
25 chr11:45245000-45250200 Strong transcription Liver Liver
26 chr11:45245000-45250200 Strong transcription Brain Angular Gyrus brain
27 chr11:45245200-45249800 Strong transcription Spleen Spleen
28 chr11:45245200-45250200 Strong transcription Aorta Aorta
29 chr11:45245200-45250800 Strong transcription Brain Cingulate Gyrus brain
30 chr11:45245200-45251000 Strong transcription Brain Germinal Matrix brain
31 chr11:45245200-45255200 Weak transcription Hela-S3 cervix
32 chr11:45245400-45250000 Strong transcription Placenta Amnion Placenta Amnion
33 chr11:45245600-45250800 Strong transcription Fetal Intestine Small intestine
34 chr11:45245800-45250800 Strong transcription Primary B cells from cord blood blood
35 chr11:45246000-45250600 Strong transcription Left Ventricle heart
36 chr11:45246000-45254800 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr11:45246200-45250200 Strong transcription Skeletal Muscle Male skeletal muscle
38 chr11:45246800-45250200 Strong transcription Duodenum Mucosa Duodenum
39 chr11:45247000-45250200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr11:45247600-45250600 Strong transcription Sigmoid Colon Sigmoid Colon
41 chr11:45247800-45250600 Strong transcription Brain Substantia Nigra brain
42 chr11:45247800-45255000 Weak transcription Primary T cells fromperipheralblood blood
43 chr11:45248000-45250400 Weak transcription Colon Smooth Muscle Colon
44 chr11:45248200-45254800 Weak transcription H9 Cell Line embryonic stem cell
45 chr11:45248200-45255200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr11:45248400-45254800 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr11:45248600-45250800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr11:45248600-45250800 Weak transcription Small Intestine intestine
49 chr11:45248600-45252400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr11:45248800-45250000 Strong transcription Lung lung

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Last update: Aug 31, 2015