Variant report

Variant	rs12294763
Chromosome Location	chr11:36325764-36325765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36319061..36322401-chr11:36325495..36327520,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10836528	1.00[JPT][hapmap]
rs10836531	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11033542	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11606433	0.83[CEU][hapmap]
rs1562325	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs1562326	1.00[JPT][hapmap]
rs17814690	1.00[JPT][hapmap]
rs2422185	1.00[JPT][hapmap]
rs2422186	1.00[JPT][hapmap]
rs2422187	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3385966	chr11:36325688-36326104	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:36322600-36325800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:36322800-36331400	Weak transcription	Gastric	stomach
6	chr11:36323000-36331400	Weak transcription	Lung	lung
7	chr11:36323000-36331400	Weak transcription	Pancreas	Pancrea
8	chr11:36323000-36331400	Weak transcription	Spleen	Spleen
9	chr11:36323000-36333800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:36323000-36334000	Weak transcription	Ovary	ovary
11	chr11:36323000-36334200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:36323000-36335200	Weak transcription	Colonic Mucosa	Colon
13	chr11:36323400-36326200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:36323400-36326400	Enhancers	Adipose Nuclei	Adipose
15	chr11:36323800-36331400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:36324000-36333800	Weak transcription	Brain Angular Gyrus	brain
17	chr11:36324800-36326000	Enhancers	Brain Hippocampus Middle	brain
18	chr11:36325400-36326200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:36325400-36326400	Enhancers	HSMMtube	muscle
20	chr11:36325400-36326600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:36325400-36326600	Enhancers	Brain Substantia Nigra	brain
22	chr11:36325400-36326600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr11:36325600-36326600	Enhancers	Rectal Mucosa Donor 31	rectum

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