Variant report

Variant	rs2422186
Chromosome Location	chr11:36323356-36323357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10836528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836530	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602024	0.83[EUR][1000 genomes]
rs12294763	1.00[JPT][hapmap]
rs1562325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1562326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17814690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2422185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386213	0.80[EUR][1000 genomes]
rs61878683	0.80[EUR][1000 genomes]
rs72946165	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:36319600-36323400	Enhancers	Brain Angular Gyrus	brain
5	chr11:36321200-36323400	Enhancers	Fetal Muscle Leg	muscle
6	chr11:36321800-36323400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr11:36321800-36323800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:36322400-36323400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr11:36322400-36323400	Enhancers	Fetal Brain Male	brain
10	chr11:36322600-36325800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:36322800-36323400	Enhancers	Brain Hippocampus Middle	brain
12	chr11:36322800-36331400	Weak transcription	Gastric	stomach
13	chr11:36323000-36325400	Weak transcription	HSMMtube	muscle
14	chr11:36323000-36331400	Weak transcription	Lung	lung
15	chr11:36323000-36331400	Weak transcription	Pancreas	Pancrea
16	chr11:36323000-36331400	Weak transcription	Spleen	Spleen
17	chr11:36323000-36333800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:36323000-36334000	Weak transcription	Ovary	ovary
19	chr11:36323000-36334200	Weak transcription	Brain Anterior Caudate	brain
20	chr11:36323000-36335200	Weak transcription	Colonic Mucosa	Colon
21	chr11:36323200-36323600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:36323200-36324200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:36323200-36325400	Weak transcription	Brain Substantia Nigra	brain
24	chr11:36323200-36325400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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