Variant report

Variant	rs72946165
Chromosome Location	chr11:36301556-36301557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10836528	0.84[EUR][1000 genomes]
rs10836530	0.83[EUR][1000 genomes]
rs10836531	0.83[EUR][1000 genomes]
rs11033524	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11033527	0.84[AFR][1000 genomes]
rs11033538	0.84[EUR][1000 genomes]
rs11033542	0.80[EUR][1000 genomes]
rs11602024	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1562325	0.82[EUR][1000 genomes]
rs1562326	0.82[EUR][1000 genomes]
rs17814690	0.84[EUR][1000 genomes]
rs1900336	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2289987	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2422185	0.80[EUR][1000 genomes]
rs2422186	0.80[EUR][1000 genomes]
rs2422187	0.80[EUR][1000 genomes]
rs2901672	0.81[EUR][1000 genomes]
rs4418777	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56386213	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61878683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484831	0.81[EUR][1000 genomes]
rs7107433	0.81[EUR][1000 genomes]
rs7109505	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7951298	0.80[EUR][1000 genomes]
rs9667667	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9787880	0.90[AFR][1000 genomes]
rs9787894	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72946165	LINC00610	cis	Thyroid	GTEx

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36282200-36302000	Weak transcription	NHEK	skin
2	chr11:36287600-36304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:36288400-36304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
6	chr11:36291000-36301800	Weak transcription	Right Atrium	heart
7	chr11:36291200-36302200	Strong transcription	Stomach Smooth Muscle	stomach
8	chr11:36291200-36302400	Strong transcription	Primary T cells from cord blood	blood
9	chr11:36291200-36302800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:36291400-36303000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:36291800-36302200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:36292000-36302000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:36292000-36302400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr11:36292000-36303200	Strong transcription	Primary B cells from cord blood	blood
15	chr11:36292000-36309600	Weak transcription	Psoas Muscle	Psoas
16	chr11:36292200-36302200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:36292200-36302200	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:36292200-36302400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:36292200-36309600	Weak transcription	A549	lung
20	chr11:36292400-36302000	Strong transcription	Liver	Liver
21	chr11:36292400-36302200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:36292400-36302400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:36292600-36301600	Strong transcription	Placenta	Placenta
24	chr11:36292600-36302000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:36293000-36302200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:36295000-36301800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:36295000-36302200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:36295000-36302400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:36295000-36310000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:36295800-36302400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:36295800-36306200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:36296200-36301600	Weak transcription	HMEC	breast
33	chr11:36296200-36302600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:36296400-36302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:36296400-36305400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:36296400-36309800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:36296600-36309600	Weak transcription	Fetal Lung	lung
38	chr11:36296600-36309600	Weak transcription	NHLF	lung
39	chr11:36296800-36304200	Weak transcription	GM12878-XiMat	blood
40	chr11:36298000-36302400	Weak transcription	Osteobl	bone
41	chr11:36298000-36302600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:36298200-36301600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:36298200-36302800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:36298200-36302800	Weak transcription	Small Intestine	intestine
45	chr11:36298200-36310000	Weak transcription	NHDF-Ad	bronchial
46	chr11:36298400-36303800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:36298400-36309400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:36298800-36301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:36299000-36302800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:36299200-36302200	Weak transcription	NH-A	brain

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