Variant report

Variant	rs11602024
Chromosome Location	chr11:36310244-36310245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36308553..36310519-chr3:28494833..28496353,2	K562	blood:
2	chr11:36303032..36306180-chr11:36307506..36310865,3	K562	blood:
3	chr11:36309810..36312786-chr11:36530434..36531939,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175104	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10836528	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836530	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836531	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033524	0.91[AFR][1000 genomes]
rs11033527	0.85[AFR][1000 genomes]
rs11033538	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033542	0.83[EUR][1000 genomes]
rs1562325	0.84[EUR][1000 genomes]
rs1562326	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17814690	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1900336	0.88[AFR][1000 genomes]
rs2289987	0.84[AFR][1000 genomes]
rs2422185	0.83[EUR][1000 genomes]
rs2422186	0.83[EUR][1000 genomes]
rs2422187	0.83[EUR][1000 genomes]
rs2901672	0.83[EUR][1000 genomes]
rs4418777	0.92[AFR][1000 genomes]
rs56386213	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61878683	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109505	0.86[AFR][1000 genomes]
rs72946165	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9667667	0.91[AFR][1000 genomes]
rs9787880	0.91[AFR][1000 genomes]
rs9787894	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11602024	LINC00610	cis	Thyroid	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
2	chr11:36303000-36310400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:36304800-36310400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:36309400-36310400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:36309400-36310400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:36309400-36310400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:36309400-36310400	Enhancers	Fetal Heart	heart
8	chr11:36309400-36310400	Enhancers	Fetal Thymus	thymus
9	chr11:36309400-36310400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:36309600-36310400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:36309600-36310400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr11:36309600-36310400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr11:36309600-36310400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:36309600-36310400	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr11:36309600-36310400	Enhancers	Fetal Brain Male	brain
16	chr11:36309600-36310400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr11:36309600-36310400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:36309600-36310400	Enhancers	Spleen	Spleen
19	chr11:36309600-36310600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr11:36309600-36310600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:36309600-36310600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr11:36309600-36310600	Flanking Active TSS	Fetal Brain Female	brain
23	chr11:36309600-36310600	Flanking Active TSS	Dnd41	blood
24	chr11:36309600-36311400	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr11:36309600-36311400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:36309600-36311400	Active TSS	A549	lung
27	chr11:36309600-36311600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:36309800-36310400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr11:36309800-36310400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:36309800-36310400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:36309800-36310400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:36309800-36310600	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr11:36309800-36311200	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:36309800-36311200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr11:36309800-36311200	Active TSS	NHLF	lung
36	chr11:36309800-36311600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr11:36309800-36311600	Active TSS	GM12878-XiMat	blood
38	chr11:36310000-36310400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr11:36310000-36310400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:36310000-36310400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:36310000-36310400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr11:36310000-36310400	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr11:36310000-36310400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr11:36310000-36310400	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr11:36310000-36310400	Active TSS	HepG2	liver
46	chr11:36310000-36310600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr11:36310000-36310600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr11:36310000-36310600	Flanking Active TSS	Placenta	Placenta
49	chr11:36310000-36310600	Flanking Active TSS	Fetal Stomach	stomach
50	chr11:36310000-36310600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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