Variant report

Variant	rs12296677
Chromosome Location	chr12:103823529-103823530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10128971	0.86[EUR][1000 genomes]
rs10400501	0.85[EUR][1000 genomes]
rs10400505	0.86[EUR][1000 genomes]
rs10400542	0.86[EUR][1000 genomes]
rs10400543	0.86[EUR][1000 genomes]
rs10467020	0.86[EUR][1000 genomes]
rs10467024	0.88[EUR][1000 genomes]
rs10860994	0.84[EUR][1000 genomes]
rs10860998	0.80[EUR][1000 genomes]
rs10860999	0.86[EUR][1000 genomes]
rs10861001	0.86[EUR][1000 genomes]
rs10861002	0.86[EUR][1000 genomes]
rs10861003	0.86[EUR][1000 genomes]
rs10861004	0.86[EUR][1000 genomes]
rs11111547	0.84[EUR][1000 genomes]
rs11111548	0.83[EUR][1000 genomes]
rs11111549	0.84[EUR][1000 genomes]
rs11111550	0.84[EUR][1000 genomes]
rs11111567	0.86[EUR][1000 genomes]
rs11111568	0.86[EUR][1000 genomes]
rs12227434	0.84[EUR][1000 genomes]
rs12227436	0.83[EUR][1000 genomes]
rs12230097	0.86[EUR][1000 genomes]
rs12230309	0.84[EUR][1000 genomes]
rs12296693	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12302389	0.86[EUR][1000 genomes]
rs12317094	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12317177	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12815173	0.84[EUR][1000 genomes]
rs12823492	0.86[EUR][1000 genomes]
rs12830978	0.84[EUR][1000 genomes]
rs1317388	0.84[EUR][1000 genomes]
rs1317389	0.86[EUR][1000 genomes]
rs1317390	0.86[EUR][1000 genomes]
rs17033834	0.84[EUR][1000 genomes]
rs17033840	0.84[EUR][1000 genomes]
rs17033932	0.88[EUR][1000 genomes]
rs2374046	0.84[EUR][1000 genomes]
rs2374064	0.84[EUR][1000 genomes]
rs2374066	0.84[EUR][1000 genomes]
rs35045561	0.84[EUR][1000 genomes]
rs35663013	0.84[EUR][1000 genomes]
rs35982214	0.84[EUR][1000 genomes]
rs7135654	0.86[EUR][1000 genomes]
rs7139422	0.84[EUR][1000 genomes]
rs7303337	0.86[EUR][1000 genomes]
rs7303437	0.86[EUR][1000 genomes]
rs7310675	0.84[EUR][1000 genomes]
rs7957584	0.84[EUR][1000 genomes]
rs7957668	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103812800-103828800	Weak transcription	Primary B cells from cord blood	blood

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