Variant report

Variant	rs10861001
Chromosome Location	chr12:103818417-103818418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10128971	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10400501	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10400505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10400542	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10400543	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467020	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467024	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10860994	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10860998	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10860999	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10861002	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10861003	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10861004	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111547	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11111548	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111549	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11111550	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111567	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111568	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111589	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11111590	0.85[YRI][hapmap];0.86[AMR][1000 genomes]
rs12227434	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12227436	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12230097	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12230309	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12296677	0.86[EUR][1000 genomes]
rs12296693	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12302389	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304113	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12308341	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12317094	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12317177	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12815173	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12816735	1.00[CEU][hapmap]
rs12823492	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12825882	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12830978	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1317388	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1317389	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1317390	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17033810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17033834	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17033840	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17033847	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17033932	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1879619	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2374046	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2374064	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2374066	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2888734	1.00[CEU][hapmap]
rs35045561	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35663013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35982214	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7135654	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7139422	1.00[CEU][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71466267	0.80[ASN][1000 genomes]
rs7303337	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7303437	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7310675	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7957584	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7957668	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7975406	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103812800-103828800	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103816000-103818600	Enhancers	Fetal Brain Male	brain
3	chr12:103816400-103819000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr12:103817200-103818800	Enhancers	Fetal Kidney	kidney
5	chr12:103817200-103819800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:103817400-103818600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:103818400-103818600	Flanking Active TSS	A549	lung
8	chr12:103818400-103819600	Enhancers	HepG2	liver

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