Variant report

Variant	rs12304113
Chromosome Location	chr12:103850017-103850018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAH-2	chr12:103849959-103850053	NONHSAT030374

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10128971	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10400501	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400505	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10400542	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10400543	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10467020	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10467024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10507165	0.85[EUR][1000 genomes]
rs10860994	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10860998	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10860999	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10861001	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10861002	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10861003	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10861004	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10861020	0.84[EUR][1000 genomes]
rs10861026	0.81[EUR][1000 genomes]
rs10861028	0.80[EUR][1000 genomes]
rs11111547	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11111548	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111549	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11111550	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11111567	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11111568	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11111589	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11111594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11111600	0.83[EUR][1000 genomes]
rs11111601	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11111602	0.81[EUR][1000 genomes]
rs11111606	0.81[EUR][1000 genomes]
rs11111607	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11503454	0.80[EUR][1000 genomes]
rs12227434	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12227436	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12230097	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12230309	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12296693	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12298824	0.82[EUR][1000 genomes]
rs12302389	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12306102	0.83[EUR][1000 genomes]
rs12306466	0.81[EUR][1000 genomes]
rs12308341	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12309875	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12311801	0.87[EUR][1000 genomes]
rs12317094	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12317177	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12319950	0.81[EUR][1000 genomes]
rs12320001	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12813302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12814770	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12815173	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12816735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12820617	0.93[ASN][1000 genomes]
rs12823492	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12825882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830978	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1317388	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1317389	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1317390	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17033834	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17033840	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17033932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1879619	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2374046	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2374064	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2374066	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2374071	0.81[EUR][1000 genomes]
rs2888734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35045561	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35199219	0.95[ASN][1000 genomes]
rs35663013	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35982214	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4015526	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7135654	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7139422	1.00[CEU][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7303337	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7303437	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7310675	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7956770	0.83[EUR][1000 genomes]
rs7957584	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7957668	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7972044	0.85[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103847600-103851400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:103847800-103850600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:103848000-103851400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr12:103848200-103850600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:103848200-103851800	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:103848400-103850600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:103848400-103851400	Enhancers	GM12878-XiMat	blood
8	chr12:103848400-103851600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:103848400-103851800	Enhancers	Primary B cells from cord blood	blood
10	chr12:103848400-103851800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:103848400-103853200	Enhancers	Dnd41	blood
12	chr12:103848600-103850800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr12:103848600-103851400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr12:103848600-103851800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:103848600-103852200	Enhancers	Primary T cells from cord blood	blood
16	chr12:103849000-103850200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr12:103849000-103850400	Enhancers	Thymus	Thymus
18	chr12:103849400-103852400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:103849600-103850600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr12:103849800-103850200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr12:103849800-103850200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr12:103849800-103850200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr12:103849800-103850400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr12:103849800-103851000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:103850000-103850200	Enhancers	Fetal Brain Male	brain
26	chr12:103850000-103850600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr12:103850000-103850800	Enhancers	Primary hematopoietic stem cells	blood

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