Variant report

Variant	rs35199219
Chromosome Location	chr12:103838620-103838621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10467024	0.98[ASN][1000 genomes]
rs11111590	0.93[ASN][1000 genomes]
rs11111594	0.84[ASN][1000 genomes]
rs12304113	0.95[ASN][1000 genomes]
rs12813302	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12814770	0.84[ASN][1000 genomes]
rs12815844	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12820617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12825882	0.95[ASN][1000 genomes]
rs17033810	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17033847	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17033932	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103835600-103838800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:103837600-103839000	Weak transcription	Primary B cells from cord blood	blood
3	chr12:103838200-103840000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:103838400-103840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:103838400-103840400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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