Variant report

Variant	rs17033847
Chromosome Location	chr12:103795963-103795964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10400501	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10400505	1.00[ASN][1000 genomes]
rs10400542	1.00[ASN][1000 genomes]
rs10860998	0.95[ASN][1000 genomes]
rs10861001	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11111547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11111548	0.91[ASN][1000 genomes]
rs11111549	0.88[ASN][1000 genomes]
rs11111550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12230309	0.91[ASN][1000 genomes]
rs12302389	0.92[ASN][1000 genomes]
rs12813302	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs12815844	0.88[EUR][1000 genomes]
rs12820617	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12830978	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17033810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17033834	0.97[ASN][1000 genomes]
rs17033840	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2374046	0.91[ASN][1000 genomes]
rs2888734	0.84[GIH][hapmap]
rs35045561	0.91[ASN][1000 genomes]
rs35199219	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35663013	0.91[ASN][1000 genomes]
rs71466267	0.87[ASN][1000 genomes]
rs7303437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7957584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7957668	0.91[ASN][1000 genomes]
rs7975406	0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103791400-103798400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103795000-103796000	Enhancers	HMEC	breast
3	chr12:103795000-103798600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:103795000-103798600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:103795200-103799000	Weak transcription	Primary T cells from cord blood	blood
6	chr12:103795200-103801600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:103795200-103814000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr12:103795600-103798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:103795600-103798600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr12:103795600-103798600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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