Variant report

Variant	rs71466267
Chromosome Location	chr12:103780992-103780993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400501	0.87[ASN][1000 genomes]
rs10400505	0.87[ASN][1000 genomes]
rs10400542	0.87[ASN][1000 genomes]
rs10860998	0.83[ASN][1000 genomes]
rs10861001	0.80[ASN][1000 genomes]
rs11111547	0.94[ASN][1000 genomes]
rs11111548	0.97[ASN][1000 genomes]
rs11111549	0.94[ASN][1000 genomes]
rs11111550	0.97[ASN][1000 genomes]
rs12230309	0.97[ASN][1000 genomes]
rs12302389	0.80[ASN][1000 genomes]
rs12830978	0.97[ASN][1000 genomes]
rs17033810	0.97[ASN][1000 genomes]
rs17033834	0.91[ASN][1000 genomes]
rs17033840	0.91[ASN][1000 genomes]
rs17033847	0.87[ASN][1000 genomes]
rs2374046	0.97[ASN][1000 genomes]
rs35045561	0.97[ASN][1000 genomes]
rs35663013	0.97[ASN][1000 genomes]
rs7303437	0.87[ASN][1000 genomes]
rs7957584	0.97[ASN][1000 genomes]
rs7957668	0.97[ASN][1000 genomes]
rs7975406	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1795884	chr12:103772579-103788340	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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