Variant report

Variant	rs11111590
Chromosome Location	chr12:103853757-103853758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr12:103853705-103853767	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103845899..103849186-chr12:103851469..103854474,4	K562	blood:
2	chr12:103853123..103855047-chr12:103862510..103864074,2	K562	blood:

Variant related genes	Relation type
C12orf42	TF binding region

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10128971	0.88[AMR][1000 genomes]
rs10400501	0.96[YRI][hapmap];0.90[AMR][1000 genomes]
rs10400505	0.90[AMR][1000 genomes]
rs10400542	0.90[AMR][1000 genomes]
rs10400543	0.90[AMR][1000 genomes]
rs10467020	0.88[AMR][1000 genomes]
rs10467024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10507165	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10860999	0.88[YRI][hapmap];0.88[AMR][1000 genomes]
rs10861001	0.85[YRI][hapmap];0.86[AMR][1000 genomes]
rs10861002	0.88[AMR][1000 genomes]
rs10861003	0.88[AMR][1000 genomes]
rs10861004	0.88[AMR][1000 genomes]
rs10861020	0.93[EUR][1000 genomes]
rs10861026	0.90[EUR][1000 genomes]
rs10861028	0.90[EUR][1000 genomes]
rs11111547	0.84[AMR][1000 genomes]
rs11111548	0.82[AMR][1000 genomes]
rs11111549	0.80[AMR][1000 genomes]
rs11111550	0.82[AMR][1000 genomes]
rs11111567	0.89[YRI][hapmap];0.88[AMR][1000 genomes]
rs11111568	0.88[AMR][1000 genomes]
rs11111589	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11111593	0.89[EUR][1000 genomes]
rs11111594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11111600	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs11111601	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11111602	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11111606	0.85[EUR][1000 genomes]
rs11111607	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11503454	0.90[EUR][1000 genomes]
rs12227434	0.82[AMR][1000 genomes]
rs12227436	0.80[AMR][1000 genomes]
rs12230097	0.84[YRI][hapmap];0.84[AMR][1000 genomes]
rs12230309	0.82[AMR][1000 genomes]
rs12298824	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs12302389	0.88[AMR][1000 genomes]
rs12304113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12306102	0.92[EUR][1000 genomes]
rs12306466	0.90[EUR][1000 genomes]
rs12308341	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12309875	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12311801	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12317094	0.86[AMR][1000 genomes]
rs12317177	0.86[AMR][1000 genomes]
rs12319950	0.90[EUR][1000 genomes]
rs12320001	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12813302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12814770	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12815173	0.82[AMR][1000 genomes]
rs12816735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12820617	0.91[ASN][1000 genomes]
rs12823492	0.84[AMR][1000 genomes]
rs12825882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12830978	0.84[AMR][1000 genomes]
rs1317389	0.82[AMR][1000 genomes]
rs1317390	0.82[AMR][1000 genomes]
rs17033834	0.80[AMR][1000 genomes]
rs17033840	0.80[AMR][1000 genomes]
rs17033932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1879619	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2374046	0.82[AMR][1000 genomes]
rs2374064	0.82[AMR][1000 genomes]
rs2374070	0.81[CEU][hapmap]
rs2374071	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs2888734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35045561	0.84[AMR][1000 genomes]
rs35199219	0.93[ASN][1000 genomes]
rs35663013	0.84[AMR][1000 genomes]
rs35982214	0.82[AMR][1000 genomes]
rs4015526	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7135654	0.84[AMR][1000 genomes]
rs7139422	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7303337	0.88[AMR][1000 genomes]
rs7303437	0.96[YRI][hapmap];0.90[AMR][1000 genomes]
rs7310675	0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7956770	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs7957584	0.82[AMR][1000 genomes]
rs7957668	0.82[AMR][1000 genomes]
rs7972044	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103851400-103855400	Weak transcription	GM12878-XiMat	blood
2	chr12:103851800-103856600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103852200-103865400	Weak transcription	Primary T cells from cord blood	blood

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