Variant report

Variant	rs12825882
Chromosome Location	chr12:103848275-103848276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103845899..103849186-chr12:103851469..103854474,4	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10128971	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400501	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10400505	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400542	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400543	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10467020	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10467024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10507165	0.84[EUR][1000 genomes]
rs10860994	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10860999	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861001	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861002	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861003	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861004	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861020	0.83[EUR][1000 genomes]
rs10861026	0.80[EUR][1000 genomes]
rs11111547	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111548	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111549	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111550	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111567	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11111568	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11111589	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11111590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11111594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11111600	0.82[EUR][1000 genomes]
rs11111601	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11111602	0.80[EUR][1000 genomes]
rs11111607	0.82[ASN][1000 genomes]
rs12227434	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12227436	0.82[EUR][1000 genomes]
rs12230097	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12230309	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12296693	0.83[EUR][1000 genomes]
rs12298824	0.81[EUR][1000 genomes]
rs12302389	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12304113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306102	0.82[EUR][1000 genomes]
rs12306466	0.80[EUR][1000 genomes]
rs12308341	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12309875	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12311801	0.86[EUR][1000 genomes]
rs12317094	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12317177	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12319950	0.80[EUR][1000 genomes]
rs12320001	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12813302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12814770	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12815173	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12816735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12820617	0.93[ASN][1000 genomes]
rs12823492	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12830978	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1317388	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1317389	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1317390	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17033834	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17033840	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17033932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1879619	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2374046	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2374064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2374066	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2374071	0.80[EUR][1000 genomes]
rs2888734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs35045561	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35199219	0.95[ASN][1000 genomes]
rs35663013	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35982214	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4015526	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7135654	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7139422	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7303337	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7303437	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7310675	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7956770	0.82[EUR][1000 genomes]
rs7957584	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7957668	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7972044	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3383576	chr12:103847913-103848291	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103847600-103851400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:103847800-103849000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:103847800-103850600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:103848000-103851400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:103848200-103850600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:103848200-103851800	Enhancers	Primary B cells from peripheral blood	blood

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