Variant report

Variant	rs12320001
Chromosome Location	chr12:103876300-103876301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10507165	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10861020	0.95[EUR][1000 genomes]
rs10861026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10861028	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11111589	0.81[EUR][1000 genomes]
rs11111590	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11111593	0.91[EUR][1000 genomes]
rs11111594	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11111600	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11111601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111602	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111606	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11111607	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11503454	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12298824	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12304113	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12306102	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12306466	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308341	0.82[EUR][1000 genomes]
rs12309875	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311801	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12319950	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12813302	0.93[ASN][1000 genomes]
rs12814770	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12825882	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1879619	0.81[EUR][1000 genomes]
rs2374071	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4015526	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956770	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7972044	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103876000-103876400	Active TSS	Primary T cells fromperipheralblood	blood
3	chr12:103876000-103876400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:103876000-103876400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:103876000-103877000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:103876200-103876400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:103876200-103876400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr12:103876200-103876400	Active TSS	GM12878-XiMat	blood
9	chr12:103876200-103876600	Enhancers	Dnd41	blood

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