Variant report

Variant	rs12308341
Chromosome Location	chr12:103852745-103852746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103845899..103849186-chr12:103851469..103854474,4	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10128971	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10400501	0.86[CEU][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10400505	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400542	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10400543	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10467020	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10467024	0.87[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10507165	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10860994	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10860998	0.83[AMR][1000 genomes]
rs10860999	0.86[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861001	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10861002	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861003	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10861004	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861020	0.85[EUR][1000 genomes]
rs10861026	0.82[EUR][1000 genomes]
rs10861028	0.81[EUR][1000 genomes]
rs11111547	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111548	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111549	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111550	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111567	0.87[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111568	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111589	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11111590	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11111593	0.81[EUR][1000 genomes]
rs11111594	0.80[YRI][hapmap];0.84[EUR][1000 genomes]
rs11111600	0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11111601	0.82[EUR][1000 genomes]
rs11111602	0.82[EUR][1000 genomes]
rs11111606	0.82[EUR][1000 genomes]
rs11111607	0.81[EUR][1000 genomes]
rs11503454	0.81[EUR][1000 genomes]
rs12227434	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12227436	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12230097	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12230309	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12296693	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12298824	0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12302389	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12304113	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12306102	0.84[EUR][1000 genomes]
rs12306466	0.82[EUR][1000 genomes]
rs12309875	0.82[EUR][1000 genomes]
rs12311801	0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12317094	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12317177	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12319950	0.82[EUR][1000 genomes]
rs12320001	0.82[EUR][1000 genomes]
rs12814770	0.85[EUR][1000 genomes]
rs12815173	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12816735	0.82[CEU][hapmap]
rs12823492	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12825882	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12830978	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1317388	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1317389	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1317390	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17033834	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17033840	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17033932	0.87[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1879619	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2374046	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2374064	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2374066	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2374071	0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs2888734	0.86[CEU][hapmap]
rs35045561	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35663013	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35982214	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4015526	0.82[EUR][1000 genomes]
rs7135654	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139422	0.87[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7303337	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7303437	0.87[CEU][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7310675	0.85[CEU][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7956770	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7957584	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7957668	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7972044	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103848400-103853200	Enhancers	Dnd41	blood
2	chr12:103850800-103852800	Enhancers	Fetal Brain Male	brain
3	chr12:103851400-103853400	Weak transcription	Thymus	Thymus
4	chr12:103851400-103855400	Weak transcription	GM12878-XiMat	blood
5	chr12:103851800-103856600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr12:103852200-103865400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links