Variant report

Variant	rs11111602
Chromosome Location	chr12:103873739-103873740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103868955..103871796-chr12:103872360..103875085,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10467019	0.86[CHB][hapmap]
rs10507165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10860994	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10860999	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10861020	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861026	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861028	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11111567	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11111589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11111590	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11111593	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11111594	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11111600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111601	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111606	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11111607	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11503454	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12230097	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12298824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12304113	0.81[EUR][1000 genomes]
rs12306102	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306466	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12308341	0.82[EUR][1000 genomes]
rs12309875	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12319950	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12320001	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12814770	0.95[EUR][1000 genomes]
rs12815173	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12823492	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12825882	0.80[EUR][1000 genomes]
rs1317388	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1317389	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs17033809	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1879619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2374066	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2374070	0.81[CEU][hapmap]
rs2374071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4015526	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7310675	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7956770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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