Variant report

Variant	rs17033809
Chromosome Location	chr12:103783356-103783357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10128971	0.98[ASN][1000 genomes]
rs10400501	0.85[MEX][hapmap]
rs10400543	0.98[ASN][1000 genomes]
rs10467019	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs10467020	0.96[ASN][1000 genomes]
rs10507165	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10745967	0.82[ASN][1000 genomes]
rs10860994	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10860999	0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs10861002	0.94[ASN][1000 genomes]
rs10861003	0.91[ASN][1000 genomes]
rs10861004	0.94[ASN][1000 genomes]
rs11111547	0.83[YRI][hapmap]
rs11111548	0.88[AFR][1000 genomes]
rs11111550	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs11111567	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11111568	0.92[ASN][1000 genomes]
rs11111589	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.80[ASN][1000 genomes]
rs11111600	0.95[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap]
rs11111602	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12227434	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12227436	1.00[ASN][1000 genomes]
rs12230097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12230309	0.87[AFR][1000 genomes]
rs12296693	0.90[ASN][1000 genomes]
rs12298824	0.95[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap]
rs12311801	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12317094	0.91[ASN][1000 genomes]
rs12317177	0.92[ASN][1000 genomes]
rs12815173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12823492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[ASN][1000 genomes]
rs12830978	0.92[MEX][hapmap];0.83[YRI][hapmap]
rs1317388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1317389	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1317390	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17033807	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17033840	0.92[MEX][hapmap]
rs1879619	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.80[ASN][1000 genomes]
rs2374046	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs2374064	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2374066	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2374071	0.95[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap]
rs2888734	0.92[MEX][hapmap]
rs35982214	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7135654	0.98[ASN][1000 genomes]
rs7139422	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7303337	0.98[ASN][1000 genomes]
rs7310675	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7956770	0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap]
rs7957584	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs7957668	0.87[AFR][1000 genomes]
rs7972044	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs7975406	0.92[CEU][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1795884	chr12:103772579-103788340	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood

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