Variant report

Variant	rs10467019
Chromosome Location	chr12:103811606-103811607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10128971	0.86[ASN][1000 genomes]
rs10400543	0.86[ASN][1000 genomes]
rs10467020	0.87[ASN][1000 genomes]
rs10507165	0.90[CHB][hapmap]
rs10745967	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10778246	0.85[AFR][1000 genomes]
rs10860994	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10860999	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs10861002	0.85[ASN][1000 genomes]
rs10861003	0.83[ASN][1000 genomes]
rs10861004	0.85[ASN][1000 genomes]
rs10861005	0.84[AFR][1000 genomes]
rs11111567	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs11111568	0.84[ASN][1000 genomes]
rs11111589	0.90[CHB][hapmap]
rs11111600	0.90[CHB][hapmap]
rs11111602	0.86[CHB][hapmap]
rs12227434	0.84[ASN][1000 genomes]
rs12227436	0.84[ASN][1000 genomes]
rs12230097	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs12296693	0.82[ASN][1000 genomes]
rs12298824	0.90[CHB][hapmap]
rs12311801	0.86[CHB][hapmap]
rs12317094	0.83[ASN][1000 genomes]
rs12317177	0.84[ASN][1000 genomes]
rs12815173	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs12823492	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs1317388	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs1317389	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1317390	0.85[ASN][1000 genomes]
rs17033809	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1879619	0.90[CHB][hapmap]
rs2374057	0.87[AFR][1000 genomes]
rs2374064	0.84[ASN][1000 genomes]
rs2374066	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs2374071	0.90[CHB][hapmap]
rs35982214	0.84[ASN][1000 genomes]
rs6539073	0.84[AFR][1000 genomes]
rs7135654	0.85[ASN][1000 genomes]
rs7139422	0.86[CHB][hapmap]
rs7300757	0.84[AFR][1000 genomes]
rs7302890	0.87[AFR][1000 genomes]
rs7303147	0.85[AFR][1000 genomes]
rs7303337	0.86[ASN][1000 genomes]
rs7304308	0.83[AFR][1000 genomes]
rs7310675	0.86[CHB][hapmap]
rs7956770	0.90[CHB][hapmap]
rs7972044	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103795200-103814000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:103809600-103815800	Weak transcription	Brain Germinal Matrix	brain

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