Variant report

Variant	rs12298824
Chromosome Location	chr12:103868698-103868699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10400501	0.93[MEX][hapmap];0.90[TSI][hapmap]
rs10467019	0.90[CHB][hapmap]
rs10467024	0.84[YRI][hapmap]
rs10507165	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10860994	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap]
rs10860999	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.92[YRI][hapmap]
rs10861020	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861026	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861028	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11111567	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs11111589	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs11111590	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs11111593	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11111594	1.00[CEU][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11111600	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11111601	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11111602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11111606	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11111607	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11503454	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12230097	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12304113	0.82[EUR][1000 genomes]
rs12306102	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12306466	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12308341	0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12309875	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12311801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12319950	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12320001	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12814770	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12815173	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12823492	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12825882	0.81[EUR][1000 genomes]
rs12830978	0.85[MEX][hapmap];0.90[TSI][hapmap]
rs1317388	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1317389	0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs17033809	0.95[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap]
rs17033840	0.85[MEX][hapmap];0.90[TSI][hapmap]
rs17033932	0.84[YRI][hapmap]
rs1879619	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2374066	0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap]
rs2374070	0.80[CEU][hapmap]
rs2374071	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2888734	0.85[MEX][hapmap];0.90[TSI][hapmap]
rs4015526	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7139422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs7310675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs7956770	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7972044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:103865600-103871800	Weak transcription	Primary T cells from cord blood	blood
4	chr12:103868400-103869600	Enhancers	HepG2	liver
5	chr12:103868600-103869400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:103868600-103869800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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