Variant report

Variant	rs11111594
Chromosome Location	chr12:103865525-103865526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103863978..103866213-chr12:103870731..103872426,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10400501	0.88[YRI][hapmap]
rs10467024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs10507165	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10860999	0.88[YRI][hapmap]
rs10861020	0.97[EUR][1000 genomes]
rs10861026	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861028	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11111547	0.81[YRI][hapmap]
rs11111567	0.89[YRI][hapmap]
rs11111589	0.83[EUR][1000 genomes]
rs11111590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11111593	0.93[EUR][1000 genomes]
rs11111600	1.00[CEU][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111601	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11111602	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11111606	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11111607	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11503454	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12298824	1.00[CEU][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12304113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12306102	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12306466	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12308341	0.80[YRI][hapmap];0.84[EUR][1000 genomes]
rs12309875	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12311801	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12319950	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12320001	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12813302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12814770	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12816735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12820617	0.82[ASN][1000 genomes]
rs12823492	0.81[YRI][hapmap]
rs12825882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17033932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs1879619	0.83[EUR][1000 genomes]
rs2374070	0.80[CEU][hapmap]
rs2374071	1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2888734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35199219	0.84[ASN][1000 genomes]
rs4015526	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7139422	0.92[YRI][hapmap]
rs7303437	0.89[YRI][hapmap]
rs7310675	0.89[YRI][hapmap]
rs7956770	1.00[CEU][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7972044	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103863800-103865600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:103864200-103865600	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:103865400-103865600	Enhancers	Primary T cells from cord blood	blood

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