Variant report
| Variant | rs12296738 |
|---|---|
| Chromosome Location | chr12:60280946-60280947 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10082957 | 0.94[ASN][1000 genomes] |
| rs11173230 | 0.94[ASN][1000 genomes] |
| rs11173243 | 0.94[ASN][1000 genomes] |
| rs11173245 | 0.94[ASN][1000 genomes] |
| rs11173246 | 0.94[ASN][1000 genomes] |
| rs11173264 | 0.88[ASN][1000 genomes] |
| rs11173269 | 0.88[ASN][1000 genomes] |
| rs12297974 | 0.94[ASN][1000 genomes] |
| rs12301829 | 0.94[ASN][1000 genomes] |
| rs12306016 | 0.94[ASN][1000 genomes] |
| rs12310883 | 0.88[ASN][1000 genomes] |
| rs12312671 | 0.88[ASN][1000 genomes] |
| rs12313195 | 0.94[ASN][1000 genomes] |
| rs12316695 | 0.88[ASN][1000 genomes] |
| rs12317797 | 0.94[ASN][1000 genomes] |
| rs12322313 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12580296 | 0.88[ASN][1000 genomes] |
| rs17123175 | 0.88[ASN][1000 genomes] |
| rs2068673 | 0.94[ASN][1000 genomes] |
| rs59151908 | 0.88[ASN][1000 genomes] |
| rs61933672 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6581290 | 0.88[ASN][1000 genomes] |
| rs7136000 | 0.94[ASN][1000 genomes] |
| rs7139137 | 0.88[ASN][1000 genomes] |
| rs7305846 | 0.88[ASN][1000 genomes] |
| rs7306594 | 0.88[ASN][1000 genomes] |
| rs73354426 | 0.88[ASN][1000 genomes] |
| rs73367129 | 0.88[ASN][1000 genomes] |
| rs73367135 | 0.88[ASN][1000 genomes] |
| rs73367139 | 0.88[ASN][1000 genomes] |
| rs7954596 | 0.88[ASN][1000 genomes] |
| rs7954708 | 0.94[ASN][1000 genomes] |
| rs7962286 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3365928 | chr12:60042531-60343212 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2751107 | chr12:60252000-60353533 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1050201 | chr12:60269149-60297702 | Weak transcription Flanking Active TSS Enhancers Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1055021 | chr12:60269149-60302823 | Enhancers Flanking Active TSS Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60242200-60295600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
