Variant report

Variant	rs7139137
Chromosome Location	chr12:60358033-60358034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60355837..60358640-chr12:60365883..60368050,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10082957	0.94[ASN][1000 genomes]
rs11173230	0.94[ASN][1000 genomes]
rs11173243	0.94[ASN][1000 genomes]
rs11173245	0.94[ASN][1000 genomes]
rs11173246	0.94[ASN][1000 genomes]
rs11173264	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11173269	1.00[ASN][1000 genomes]
rs11173277	0.88[ASN][1000 genomes]
rs12296738	0.88[ASN][1000 genomes]
rs12296921	0.88[ASN][1000 genomes]
rs12297974	0.94[ASN][1000 genomes]
rs12300142	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12301829	0.94[ASN][1000 genomes]
rs12303560	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12303670	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12306016	0.94[ASN][1000 genomes]
rs12310883	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12312671	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12313195	0.94[ASN][1000 genomes]
rs12316695	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12317797	0.94[ASN][1000 genomes]
rs12320928	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12322313	0.88[ASN][1000 genomes]
rs12580296	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123175	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17123206	0.88[ASN][1000 genomes]
rs2068673	0.94[ASN][1000 genomes]
rs58884159	0.88[ASN][1000 genomes]
rs59151908	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6581290	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7136000	0.94[ASN][1000 genomes]
rs7305846	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7306594	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354426	1.00[ASN][1000 genomes]
rs73364809	0.88[ASN][1000 genomes]
rs73364812	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73367129	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367135	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367139	1.00[ASN][1000 genomes]
rs7954596	1.00[ASN][1000 genomes]
rs7954708	0.94[ASN][1000 genomes]
rs7962286	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv826393	chr12:60293625-60359283	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60357600-60359000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:60357800-60358800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:60358000-60358400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:60358000-60360400	Enhancers	HUES48 Cell Line	embryonic stem cell

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