Variant report

Variant	rs12297017
Chromosome Location	chr12:41656755-41656756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11180478	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180505	0.94[AFR][1000 genomes]
rs11180506	0.95[AFR][1000 genomes]
rs11180507	0.97[AFR][1000 genomes]
rs11180566	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180567	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180586	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180587	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180626	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180634	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180646	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296962	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297322	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297913	0.98[AFR][1000 genomes]
rs12300590	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300840	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300884	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300953	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302094	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304516	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305125	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305252	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305924	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306285	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307937	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310793	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310860	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313636	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315362	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315979	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377633	0.83[EUR][1000 genomes]
rs1367606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431123	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431125	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431126	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129177	0.98[AFR][1000 genomes]
rs17129202	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129211	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082222	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217492	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405771	0.83[EUR][1000 genomes]
rs3858730	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67832493	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268788	0.95[EUR][1000 genomes]
rs73270806	1.00[AFR][1000 genomes]
rs73270807	1.00[AFR][1000 genomes]
rs73270809	1.00[AFR][1000 genomes]
rs73281725	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv517338	chr12:41653979-41662453	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41644800-41657200	Weak transcription	Ovary	ovary
2	chr12:41651200-41661000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links