Variant report

Variant	rs11180505
Chromosome Location	chr12:41652931-41652932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11180506	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180557	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs11180590	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs12297017	0.94[AFR][1000 genomes]
rs12297913	1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305125	0.89[GIH][hapmap]
rs12305252	0.95[GIH][hapmap];0.85[MEX][hapmap]
rs12306167	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs12306457	0.90[EUR][1000 genomes]
rs12307881	0.92[CEU][hapmap]
rs12307937	0.89[GIH][hapmap]
rs12312488	0.92[EUR][1000 genomes]
rs12314080	0.92[CEU][hapmap]
rs12317394	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs12319787	0.97[EUR][1000 genomes]
rs1431125	0.89[GIH][hapmap]
rs17129177	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129178	0.92[CEU][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129202	0.89[GIH][hapmap]
rs3858730	0.89[GIH][hapmap]
rs6582291	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs67467631	0.82[EUR][1000 genomes]
rs73270806	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270807	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270809	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486754	1.00[CEU][hapmap];0.89[GIH][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs961749	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41644800-41657200	Weak transcription	Ovary	ovary
2	chr12:41651200-41661000	Weak transcription	Colon Smooth Muscle	Colon

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