Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11180505	0.90[EUR][1000 genomes]
rs11180506	0.89[EUR][1000 genomes]
rs11180507	0.90[EUR][1000 genomes]
rs11180557	0.89[EUR][1000 genomes]
rs11180566	0.85[AFR][1000 genomes]
rs11180567	0.85[AFR][1000 genomes]
rs11180590	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12297913	0.90[EUR][1000 genomes]
rs12300590	0.82[AFR][1000 genomes]
rs12300840	0.82[AFR][1000 genomes]
rs12300884	0.82[AFR][1000 genomes]
rs12300953	0.82[AFR][1000 genomes]
rs12306167	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12312488	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12317394	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319787	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367606	0.97[AFR][1000 genomes]
rs1431125	0.83[AFR][1000 genomes]
rs1431126	0.83[AFR][1000 genomes]
rs17129177	0.90[EUR][1000 genomes]
rs17129178	0.86[EUR][1000 genomes]
rs3858730	0.82[AFR][1000 genomes]
rs6582291	0.89[EUR][1000 genomes]
rs73270806	0.90[EUR][1000 genomes]
rs73270807	0.90[EUR][1000 genomes]
rs73270809	0.92[EUR][1000 genomes]
rs7486754	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961749	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv558700	chr12:41665279-41710912	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41671200-41684600	Weak transcription	Ovary	ovary
2	chr12:41671800-41680200	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41674200-41674800	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:41674200-41675000	Enhancers	Lung	lung

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