Variant report

Variant	rs961749
Chromosome Location	chr12:41659770-41659771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11180505	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11180506	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs11180507	0.97[EUR][1000 genomes]
rs11180557	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11180566	0.97[AFR][1000 genomes]
rs11180567	0.90[YRI][hapmap];0.97[AFR][1000 genomes]
rs11180590	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12297913	0.97[EUR][1000 genomes]
rs12300590	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12300840	0.90[YRI][hapmap];1.00[AFR][1000 genomes]
rs12300884	1.00[AFR][1000 genomes]
rs12300953	0.95[YRI][hapmap];1.00[AFR][1000 genomes]
rs12302094	0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs12306167	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12306457	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307881	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12312488	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12314080	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12317394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367606	0.96[YRI][hapmap]
rs1431125	0.96[YRI][hapmap];0.99[AFR][1000 genomes]
rs1431126	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs17129177	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17129178	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs3858730	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6582291	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67467631	0.85[EUR][1000 genomes]
rs67832493	0.97[AFR][1000 genomes]
rs73270806	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73270807	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73270809	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7486754	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv517338	chr12:41653979-41662453	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3404398	chr12:41658910-41661458	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3447263	chr12:41659135-41661133	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv2648805	chr12:41659285-41660883	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3370873	chr12:41659585-41660633	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv2204947	chr12:41659631-41660328	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv5502	chr12:41659694-41660394	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3486252	chr12:41659703-41660218	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3517753	chr12:41659723-41660243	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3517749	chr12:41659733-41660224	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3517750	chr12:41659743-41660189	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3517747	chr12:41659745-41660170	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3486274	chr12:41659755-41660207	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3486286	chr12:41659757-41660204	Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3486241	chr12:41659765-41660160	Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3517746	chr12:41659766-41660191	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41651200-41661000	Weak transcription	Colon Smooth Muscle	Colon

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