Variant report

Variant	rs11180590
Chromosome Location	chr12:41670546-41670547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11180505	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11180506	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs11180507	0.89[EUR][1000 genomes]
rs11180557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180661	1.00[CHB][hapmap]
rs12297169	1.00[CHB][hapmap]
rs12297913	0.89[EUR][1000 genomes]
rs12306167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306457	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12307881	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12312488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314080	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12317394	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12319787	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1560448	1.00[CHB][hapmap]
rs17129177	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs17129178	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6582291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582304	1.00[CHB][hapmap]
rs67467631	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7298753	1.00[CHB][hapmap]
rs73270806	0.89[EUR][1000 genomes]
rs73270807	0.89[EUR][1000 genomes]
rs73270809	0.90[EUR][1000 genomes]
rs7486754	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7958277	1.00[CHB][hapmap]
rs7959120	1.00[CHB][hapmap]
rs7961153	1.00[CHB][hapmap]
rs7962171	1.00[CHB][hapmap]
rs7979212	1.00[CHB][hapmap]
rs7980336	1.00[CHB][hapmap]
rs961749	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv558700	chr12:41665279-41710912	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41668800-41671000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr12:41669000-41671200	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41669600-41671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:41669600-41671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links