Variant report
| Variant | rs17129178 |
|---|---|
| Chromosome Location | chr12:41654939-41654940 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11180505 | 0.92[CEU][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11180506 | 0.80[CEU][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11180507 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11180557 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11180590 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12297913 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12306167 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12306457 | 0.86[EUR][1000 genomes] |
| rs12307881 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12312488 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12314080 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12317394 | 0.92[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs12319787 | 0.92[EUR][1000 genomes] |
| rs17129177 | 0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6582291 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs67467631 | 0.87[EUR][1000 genomes] |
| rs73270806 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73270807 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73270809 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7486754 | 0.92[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs961749 | 0.92[CEU][hapmap];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497867 | chr12:41286305-41728650 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv899034 | chr12:41515090-41698342 | Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv899035 | chr12:41548545-41710912 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv469364 | chr12:41631105-41710912 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv558699 | chr12:41631105-41710912 | Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv517338 | chr12:41653979-41662453 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41644800-41657200 | Weak transcription | Ovary | ovary |
| 2 | chr12:41651200-41661000 | Weak transcription | Colon Smooth Muscle | Colon |
