Variant report

Variant	rs12297162
Chromosome Location	chr12:42649974-42649975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11181342	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11181372	1.00[AFR][1000 genomes]
rs11181374	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11181376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11181377	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11181392	1.00[AFR][1000 genomes]
rs11181394	1.00[AFR][1000 genomes]
rs12297435	0.82[AFR][1000 genomes]
rs12299193	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12300368	0.94[AFR][1000 genomes]
rs12300611	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12300698	1.00[AFR][1000 genomes]
rs12301505	1.00[AFR][1000 genomes]
rs12305400	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12307866	1.00[AFR][1000 genomes]
rs12308598	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12308904	1.00[AFR][1000 genomes]
rs12309515	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12312690	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12313448	1.00[AFR][1000 genomes]
rs12313668	0.88[AFR][1000 genomes]
rs12314028	1.00[AFR][1000 genomes]
rs12319084	1.00[AFR][1000 genomes]
rs12321515	1.00[AFR][1000 genomes]
rs12322392	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv826351	chr12:42584218-42676281	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv826352	chr12:42593124-42675255	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3397788	chr12:42636734-42665519	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42648800-42650200	Enhancers	Hela-S3	cervix
2	chr12:42649200-42650000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:42649600-42650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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