Variant report
| Variant | rs12322392 |
|---|---|
| Chromosome Location | chr12:42636812-42636813 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr12:42636637-42636837 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| YAF2 | TF binding region |
| ENSG00000015153 | Chromatin interaction |
| ENSG00000134283 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11181342 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs11181372 | 1.00[AFR][1000 genomes] |
| rs11181374 | 1.00[AFR][1000 genomes] |
| rs11181376 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs11181377 | 1.00[AFR][1000 genomes] |
| rs11181392 | 1.00[AFR][1000 genomes] |
| rs11181394 | 1.00[AFR][1000 genomes] |
| rs12297162 | 1.00[AFR][1000 genomes] |
| rs12297435 | 0.82[AFR][1000 genomes] |
| rs12299193 | 1.00[AFR][1000 genomes] |
| rs12300368 | 0.94[AFR][1000 genomes] |
| rs12300611 | 1.00[AFR][1000 genomes] |
| rs12300698 | 1.00[AFR][1000 genomes] |
| rs12301505 | 1.00[AFR][1000 genomes] |
| rs12305400 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12307866 | 1.00[AFR][1000 genomes] |
| rs12308598 | 1.00[AFR][1000 genomes] |
| rs12308904 | 1.00[AFR][1000 genomes] |
| rs12309515 | 1.00[AFR][1000 genomes] |
| rs12312690 | 1.00[AFR][1000 genomes] |
| rs12313448 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12313668 | 0.88[AFR][1000 genomes] |
| rs12314028 | 1.00[AFR][1000 genomes] |
| rs12319084 | 1.00[AFR][1000 genomes] |
| rs12321515 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv826351 | chr12:42584218-42676281 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv826352 | chr12:42593124-42675255 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv3397788 | chr12:42636734-42665519 | Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
