Variant report

Variant	rs12298237
Chromosome Location	chr12:21474776-21474777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11045953	0.89[YRI][hapmap]
rs11045956	1.00[YRI][hapmap]
rs11045958	0.89[YRI][hapmap]
rs11045960	1.00[YRI][hapmap]
rs12297072	1.00[AMR][1000 genomes]
rs12298425	1.00[AMR][1000 genomes]
rs12303558	1.00[AMR][1000 genomes]
rs12312475	1.00[AMR][1000 genomes]
rs12322006	1.00[AMR][1000 genomes]
rs7137014	1.00[YRI][hapmap]
rs7305484	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7952736	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7967303	0.89[YRI][hapmap]
rs7967403	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21473800-21477800	Active TSS	Brain Angular Gyrus	brain
2	chr12:21473800-21477800	Active TSS	Brain Cingulate Gyrus	brain
3	chr12:21473800-21478200	Active TSS	Brain Anterior Caudate	brain
4	chr12:21474600-21474800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
5	chr12:21474600-21474800	Flanking Active TSS	Brain Substantia Nigra	brain
6	chr12:21474600-21477800	Active TSS	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links