Variant report

Variant	rs7952736
Chromosome Location	chr12:21451794-21451795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11045953	0.91[LWK][hapmap];0.89[YRI][hapmap]
rs11045956	0.91[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11045958	0.91[LWK][hapmap];0.89[YRI][hapmap]
rs11045960	0.91[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11568550	1.00[CEU][hapmap]
rs11568573	1.00[AFR][1000 genomes]
rs12298237	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs34211424	0.81[AFR][1000 genomes]
rs7137014	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7304940	1.00[AFR][1000 genomes]
rs7305484	1.00[ASW][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7967303	0.89[YRI][hapmap]
rs7967403	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898891	chr12:21422253-21453355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv898892	chr12:21428371-21453355	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv898893	chr12:21444883-21453355	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv557736	chr12:21446936-21453466	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7952736	TRIB2	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:21426600-21460400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:21447600-21460600	Weak transcription	Brain Substantia Nigra	brain
5	chr12:21449200-21453200	Weak transcription	Liver	Liver
6	chr12:21450800-21460600	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:21451400-21460600	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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