Variant report

Variant	rs12298583
Chromosome Location	chr12:41979209-41979210
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10129023	1.00[YRI][hapmap]
rs11180876	1.00[YRI][hapmap]
rs11180951	1.00[YRI][hapmap]
rs11181018	1.00[AFR][1000 genomes]
rs11181019	1.00[AFR][1000 genomes]
rs12298361	1.00[AFR][1000 genomes]
rs12299223	1.00[YRI][hapmap]
rs12302081	1.00[YRI][hapmap]
rs12302262	1.00[YRI][hapmap]
rs12306144	1.00[YRI][hapmap]
rs12313795	1.00[YRI][hapmap]
rs12315394	1.00[YRI][hapmap]
rs7964220	1.00[AFR][1000 genomes]
rs7979293	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41977000-41981200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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