Variant report

Variant	rs12315394
Chromosome Location	chr12:41868793-41868794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129023	1.00[YRI][hapmap]
rs11180876	1.00[YRI][hapmap]
rs11180951	1.00[YRI][hapmap]
rs12299223	1.00[YRI][hapmap]
rs12302081	1.00[YRI][hapmap]
rs12302262	1.00[YRI][hapmap]
rs12306144	1.00[YRI][hapmap]
rs12313795	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12322165	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:41866800-41870400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:41867200-41869600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:41867400-41869600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:41867600-41869600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:41867800-41870000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:41868000-41869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:41868000-41871200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr12:41868400-41870400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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