Variant report

Variant	rs12322165
Chromosome Location	chr12:41744059-41744060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10129023	1.00[YRI][hapmap]
rs10880069	1.00[AMR][1000 genomes]
rs11180835	1.00[AFR][1000 genomes]
rs11180875	1.00[AMR][1000 genomes]
rs11180876	1.00[YRI][hapmap]
rs11180883	1.00[AMR][1000 genomes]
rs11180951	1.00[YRI][hapmap]
rs12299223	1.00[YRI][hapmap]
rs12302081	1.00[YRI][hapmap]
rs12302262	1.00[YRI][hapmap]
rs12302590	1.00[AMR][1000 genomes]
rs12306144	1.00[YRI][hapmap]
rs12313795	1.00[YRI][hapmap]
rs12315394	1.00[YRI][hapmap]
rs12319238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links