Variant report

Variant	rs12298827
Chromosome Location	chr12:60194678-60194679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10160899	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10161078	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10161101	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10437931	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173140	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173141	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173142	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173144	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173145	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173146	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173154	1.00[EUR][1000 genomes]
rs11173161	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11173162	1.00[EUR][1000 genomes]
rs11503677	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11504057	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12296304	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12300901	1.00[EUR][1000 genomes]
rs12301821	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12303301	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12303722	0.91[AFR][1000 genomes]
rs12304208	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12304515	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12306387	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12310755	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12312017	1.00[EUR][1000 genomes]
rs12316816	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12317292	1.00[EUR][1000 genomes]
rs12317501	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12318590	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12318639	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13378061	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17123009	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56121641	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7133476	1.00[EUR][1000 genomes]
rs7307407	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7307832	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7310780	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7311237	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7312127	1.00[EUR][1000 genomes]
rs7316320	0.97[AFR][1000 genomes]
rs74095498	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74095500	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74095501	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74095773	1.00[EUR][1000 genomes]
rs74095777	1.00[EUR][1000 genomes]
rs74095781	1.00[EUR][1000 genomes]
rs74095784	1.00[EUR][1000 genomes]
rs74095794	1.00[EUR][1000 genomes]
rs74096452	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74096453	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74098413	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74098415	1.00[AFR][1000 genomes]
rs7972335	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899132	chr12:60087572-60211476	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv899133	chr12:60135504-60202218	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv559101	chr12:60164408-60202218	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv559102	chr12:60164408-60221898	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60186800-60197600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:60190000-60206200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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