Variant report

Variant	rs74095794
Chromosome Location	chr12:60237301-60237302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10160899	1.00[EUR][1000 genomes]
rs10161078	1.00[EUR][1000 genomes]
rs10161101	1.00[EUR][1000 genomes]
rs10437931	1.00[EUR][1000 genomes]
rs11173128	1.00[AMR][1000 genomes]
rs11173140	1.00[EUR][1000 genomes]
rs11173141	1.00[EUR][1000 genomes]
rs11173142	1.00[EUR][1000 genomes]
rs11173144	1.00[EUR][1000 genomes]
rs11173145	1.00[EUR][1000 genomes]
rs11173146	1.00[EUR][1000 genomes]
rs11173154	1.00[EUR][1000 genomes]
rs11173161	1.00[EUR][1000 genomes]
rs11173162	1.00[EUR][1000 genomes]
rs11503677	1.00[EUR][1000 genomes]
rs11504057	1.00[EUR][1000 genomes]
rs12296304	1.00[EUR][1000 genomes]
rs12298827	1.00[EUR][1000 genomes]
rs12300901	1.00[EUR][1000 genomes]
rs12301821	1.00[EUR][1000 genomes]
rs12303301	1.00[EUR][1000 genomes]
rs12304208	1.00[EUR][1000 genomes]
rs12304515	1.00[EUR][1000 genomes]
rs12306387	1.00[EUR][1000 genomes]
rs12310755	1.00[EUR][1000 genomes]
rs12312017	1.00[EUR][1000 genomes]
rs12316816	1.00[EUR][1000 genomes]
rs12317292	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12317501	1.00[EUR][1000 genomes]
rs12318590	1.00[EUR][1000 genomes]
rs12318639	1.00[EUR][1000 genomes]
rs13378061	1.00[EUR][1000 genomes]
rs17123009	1.00[EUR][1000 genomes]
rs56121641	1.00[EUR][1000 genomes]
rs56980926	1.00[AMR][1000 genomes]
rs58060278	1.00[AMR][1000 genomes]
rs7133476	1.00[EUR][1000 genomes]
rs7307407	1.00[EUR][1000 genomes]
rs7307832	1.00[EUR][1000 genomes]
rs7310780	1.00[EUR][1000 genomes]
rs7311237	1.00[EUR][1000 genomes]
rs7312127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73358620	1.00[AMR][1000 genomes]
rs73358624	1.00[AMR][1000 genomes]
rs74095498	1.00[EUR][1000 genomes]
rs74095500	1.00[EUR][1000 genomes]
rs74095501	1.00[EUR][1000 genomes]
rs74095773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095784	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095785	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096452	1.00[EUR][1000 genomes]
rs74096453	1.00[EUR][1000 genomes]
rs74098413	1.00[EUR][1000 genomes]
rs7966802	1.00[AMR][1000 genomes]
rs7977969	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60225400-60240000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:60234400-60238600	Weak transcription	HUVEC	blood vessel
3	chr12:60236600-60238000	Enhancers	Stomach Mucosa	stomach
4	chr12:60237000-60237800	Enhancers	Liver	Liver
5	chr12:60237200-60237800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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