Variant report

Variant	rs7977969
Chromosome Location	chr12:60252033-60252034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11173128	1.00[AMR][1000 genomes]
rs12296723	1.00[EUR][1000 genomes]
rs12307550	1.00[EUR][1000 genomes]
rs56017517	1.00[EUR][1000 genomes]
rs56980926	1.00[AMR][1000 genomes]
rs58060278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312127	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354417	1.00[EUR][1000 genomes]
rs73354432	1.00[EUR][1000 genomes]
rs73358620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73358624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73364822	1.00[EUR][1000 genomes]
rs73367126	1.00[EUR][1000 genomes]
rs73367133	1.00[EUR][1000 genomes]
rs73367151	1.00[EUR][1000 genomes]
rs73367159	1.00[EUR][1000 genomes]
rs73367163	1.00[EUR][1000 genomes]
rs74095773	1.00[AMR][1000 genomes]
rs74095777	1.00[AMR][1000 genomes]
rs74095781	1.00[AMR][1000 genomes]
rs74095784	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095794	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7971766	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60242200-60295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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