Variant report
| Variant | rs73354417 |
|---|---|
| Chromosome Location | chr12:60356384-60356385 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60355837..60358640-chr12:60365883..60368050,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11832585 | 1.00[EUR][1000 genomes] |
| rs11832722 | 1.00[EUR][1000 genomes] |
| rs11834001 | 1.00[EUR][1000 genomes] |
| rs1948444 | 1.00[EUR][1000 genomes] |
| rs3847659 | 1.00[EUR][1000 genomes] |
| rs3847660 | 1.00[EUR][1000 genomes] |
| rs4758850 | 1.00[EUR][1000 genomes] |
| rs56017517 | 1.00[EUR][1000 genomes] |
| rs58060278 | 1.00[EUR][1000 genomes] |
| rs7132956 | 1.00[EUR][1000 genomes] |
| rs73351905 | 1.00[EUR][1000 genomes] |
| rs73354432 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73358620 | 1.00[EUR][1000 genomes] |
| rs73358624 | 1.00[EUR][1000 genomes] |
| rs73364822 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73364852 | 0.88[AFR][1000 genomes] |
| rs73364863 | 1.00[EUR][1000 genomes] |
| rs73364867 | 1.00[EUR][1000 genomes] |
| rs73364874 | 1.00[EUR][1000 genomes] |
| rs73364876 | 1.00[EUR][1000 genomes] |
| rs73367126 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73367132 | 1.00[AFR][1000 genomes] |
| rs73367133 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73367151 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73367159 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73367163 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73368845 | 1.00[EUR][1000 genomes] |
| rs73368875 | 1.00[EUR][1000 genomes] |
| rs7966802 | 1.00[EUR][1000 genomes] |
| rs7977969 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv826393 | chr12:60293625-60359283 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv516042 | chr12:60354307-60459370 | Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60356200-60357000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
