Variant report

Variant	rs73364863
Chromosome Location	chr12:60479871-60479872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:60478315..60480971-chr12:60488037..60490719,3	MCF-7	breast:
2	chr12:60472741..60475079-chr12:60479250..60481071,2	K562	blood:
3	chr12:60463450..60465824-chr12:60478986..60481258,2	MCF-7	breast:
4	chr12:60466814..60469463-chr12:60479017..60481348,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11832585	1.00[EUR][1000 genomes]
rs11832722	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11834001	1.00[EUR][1000 genomes]
rs1948444	1.00[EUR][1000 genomes]
rs3847659	1.00[EUR][1000 genomes]
rs3847660	1.00[EUR][1000 genomes]
rs4758850	1.00[EUR][1000 genomes]
rs7132956	1.00[EUR][1000 genomes]
rs73351905	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73354417	1.00[EUR][1000 genomes]
rs73354432	1.00[EUR][1000 genomes]
rs73355386	1.00[EUR][1000 genomes]
rs73355390	1.00[EUR][1000 genomes]
rs73355396	1.00[EUR][1000 genomes]
rs73357118	1.00[EUR][1000 genomes]
rs73357123	1.00[EUR][1000 genomes]
rs73357124	1.00[EUR][1000 genomes]
rs73357126	1.00[EUR][1000 genomes]
rs73357128	1.00[EUR][1000 genomes]
rs73357137	1.00[EUR][1000 genomes]
rs73357141	1.00[EUR][1000 genomes]
rs73358620	1.00[EUR][1000 genomes]
rs73358624	1.00[EUR][1000 genomes]
rs73364822	1.00[EUR][1000 genomes]
rs73364867	1.00[EUR][1000 genomes]
rs73364871	0.93[AFR][1000 genomes]
rs73364874	1.00[EUR][1000 genomes]
rs73364876	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365604	1.00[EUR][1000 genomes]
rs73365607	1.00[EUR][1000 genomes]
rs73365610	1.00[EUR][1000 genomes]
rs73365614	1.00[EUR][1000 genomes]
rs73365615	1.00[EUR][1000 genomes]
rs73365622	1.00[EUR][1000 genomes]
rs73365630	1.00[EUR][1000 genomes]
rs73365639	1.00[EUR][1000 genomes]
rs73365644	1.00[EUR][1000 genomes]
rs73365647	1.00[EUR][1000 genomes]
rs73365653	1.00[EUR][1000 genomes]
rs73365654	1.00[EUR][1000 genomes]
rs73367126	1.00[EUR][1000 genomes]
rs73367133	1.00[EUR][1000 genomes]
rs73367151	1.00[EUR][1000 genomes]
rs73367159	1.00[EUR][1000 genomes]
rs73367163	1.00[EUR][1000 genomes]
rs73368845	1.00[EUR][1000 genomes]
rs73368872	0.86[AFR][1000 genomes]
rs73368875	1.00[EUR][1000 genomes]
rs73368992	1.00[EUR][1000 genomes]
rs73368998	1.00[EUR][1000 genomes]
rs73369000	1.00[EUR][1000 genomes]
rs73370709	1.00[EUR][1000 genomes]
rs73370724	1.00[EUR][1000 genomes]
rs73370735	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1048137	chr12:60432594-60515455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60478000-60489000	Weak transcription	Pancreas	Pancrea
2	chr12:60478600-60492800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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